Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPD_1165HyaD peptidase. Aspartic peptidase. MEROPS family A31. (203 aa)    
Predicted Functional Partners:
RPD_1169
HupH hydrogenase expression protein.
 
  
 0.962
RPD_1168
Hydrogenase-1 expression HyaE; Belongs to the HupG/HyaE family.
 
  
 0.960
RPD_1167
Hydrogenase assembly chaperone hypC/hupF.
 
  
 0.959
RPD_1164
Nickel-dependent hydrogenase b-type cytochrome subunit.
 
  
 0.957
RPD_1162
Hydrogenase (NiFe) small subunit (hydA).
 
  
 0.940
RPD_1163
Nickel-dependent hydrogenase, large subunit; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
 
 
 0.933
RPD_1172
Coenzyme F420-reducing hydrogenase alpha subunit-like.
 
 
 0.927
RPD_1161
Nickel-dependent hydrogenase, large subunit.
 
 
 0.915
RPD_1171
Putative hydrogenase expression/formation protein HupJ.
 
  
 0.906
RPD_1160
NADH ubiquinone oxidoreductase, 20 kDa subunit.
 
  
 0.904
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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