STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPD_1276Histone deacetylase superfamily. (370 aa)    
Predicted Functional Partners:
RPD_1714
Nuclear protein SET.
  
 0.827
RPD_3720
AAA ATPase, central region.
   
 0.816
RPD_3967
Peptidase C56, PfpI.
  
 0.728
RPD_3368
ATP-binding region, ATPase-like.
   
 0.724
htpG
Heat shock protein Hsp90; Molecular chaperone. Has ATPase activity.
   
 0.724
RPD_0161
Twin-arginine translocation pathway signal.
   
 0.715
RPD_0698
Amine oxidase.
   
 0.715
RPD_0847
WD-40 repeat.
    
 0.648
RPD_1924
Conserved hypothetical protein.
    
 0.648
RPD_3905
D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
 
 
 0.560
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.