Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPD_1386Allergen V5/Tpx-1 related. (170 aa)    
Predicted Functional Partners:
RPD_1372
Conserved hypothetical protein.
  
     0.630
RPD_1670
Conserved hypothetical protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
  
  
 0.619
RPD_1939
Conserved hypothetical protein.
  
  
 0.619
RPD_0792
Conserved hypothetical protein.
 
     0.556
RPD_2063
Conserved hypothetical protein.
  
     0.532
RPD_3893
Conserved hypothetical protein.
  
   
 0.529
RPD_3281
Conserved hypothetical protein; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
     0.515
RPD_1979
Peptidase S1 and S6, chymotrypsin/Hap.
  
 
 0.514
RPD_0414
Conserved hypothetical protein.
  
     0.510
RPD_2056
Conserved hypothetical protein.
  
     0.497
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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