STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPD_1406Protein of unknown function DUF882. (589 aa)    
Predicted Functional Partners:
RPD_1407
Peptidoglycan-binding domain 1.
 
   
 0.877
RPD_0134
Beta-lactamase-like.
 
    0.727
RPD_0158
Murein endopeptidase. Metallo peptidase. MEROPS family M74.
  
   
 0.707
RPD_3703
Conserved hypothetical protein 1620.
  
     0.556
RPD_0298
Protein of unknown function DUF949.
  
    0.531
RPD_3702
Protein of unknown function DUF463, YcjX-like protein.
  
     0.491
RPD_1265
Beta-lactamase-like.
 
    0.490
RPD_2941
CreA.
  
     0.481
RPD_3269
Conserved hypothetical protein.
  
     0.471
RPD_3454
ErfK/YbiS/YcfS/YnhG.
 
     0.467
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.