Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RPD_1479Hemerythrin HHE cation binding region. (197 aa)    
Predicted Functional Partners:
RPD_1480
Heavy metal translocating P-type ATPase.
       0.499
RPD_2798
Conserved hypothetical protein.
  
     0.488
RPD_3600
Hypothetical protein.
  
     0.486
RPD_2728
Curlin associated.
  
    0.481
RPD_2727
Curlin associated.
  
    0.477
RPD_2426
Conserved hypothetical protein.
  
     0.469
RPD_2083
Radical SAM.
  
    0.428
RPD_3849
Outer membrane autotransporter barrel.
  
     0.411
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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