Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPD_1491Transport-associated. (216 aa)    
Predicted Functional Partners:
RPD_4077
CsbD-like; Belongs to the UPF0337 (CsbD) family.
 
    0.724
RPD_2934
Protein of unknown function DUF1328.
  
  
 0.704
RPD_3366
Protein of unknown function DUF1328.
  
  
 0.704
RPD_1374
CsbD-like; Belongs to the UPF0337 (CsbD) family.
  
    0.665
RPD_1492
Fructose-6-phosphate phosphoketolase.
     
 0.577
RPD_1346
UspA.
 
   
 0.512
RPD_1356
Putative cytochrome c, class I.
  
   
 0.499
RPD_0214
Peptidoglycan-binding domain 1.
  
  
 0.490
RPD_1341
Response regulator receiver.
  
   
 0.459
RPD_2084
Conserved hypothetical protein.
  
     0.454
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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