STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPD_1502Glucose-methanol-choline oxidoreductase. (535 aa)    
Predicted Functional Partners:
RPD_2072
Cytochrome c, class I.
  
 
 0.926
RPD_0847
WD-40 repeat.
    
 0.814
RPD_1924
Conserved hypothetical protein.
    
 0.814
RPD_1503
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
  
 0.637
RPD_1009
Peptidase C14, caspase catalytic subunit p20.
  
 
 0.589
RPD_3110
Pyrrolo-quinoline quinone.
  
 
 0.580
RPD_3153
Tetratricopeptide TPR_2.
  
 
 0.579
RPD_1066
Conserved hypothetical protein.
    
 0.500
RPD_1690
Conserved hypothetical protein.
    
 0.500
RPD_2298
Tetratricopeptide TPR_2.
    
 0.500
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.