Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPD_1528GCN5-related N-acetyltransferase. (168 aa)    
Predicted Functional Partners:
RPD_1527
GCN5-related N-acetyltransferase.
 
  
0.830
RPD_1529
Transcriptional regulator, BadM/Rrf2 family.
 
 
 0.807
RPD_1537
benzoyl-CoA reductase (4-electron) beta subunit.
  
     0.756
RPD_1538
benzoyl-CoA reductase (4-electron) gamma subunit.
  
   
 0.754
RPD_1536
benzoyl-CoA reductase (4-electron) alpha subunit.
  
    0.741
RPD_1535
benzoyl-CoA reductase (4-electron) delta subunit.
  
    0.689
RPD_1526
benzoate-CoA ligase.
 
   
 0.652
RPD_2501
Conserved hypothetical protein.
  
     0.548
RPD_1534
benzoate-CoA ligase.
  
   
 0.533
RPD_1523
4-hydroxybenzoyl-CoA reductase beta subunit.
 
     0.513
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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