STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPD_15412-hydroxycyclohexane-1-carbonyl-CoA dehydrogenase. (255 aa)    
Predicted Functional Partners:
menB
2-ketocyclohexane 1-carbonyl-CoA hydrolase; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA); Belongs to the enoyl-CoA hydratase/isomerase family. MenB subfamily.
 
 
 0.989
RPD_1545
Cyclohex-1-ene 1-carbonyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
   
 0.947
RPD_3113
MaoC-like dehydratase.
 
 0.908
RPD_1135
MaoC-like dehydratase.
 0.906
RPD_1540
Transcriptional regulator, MarR family.
 
   
 0.812
RPD_1543
acyl-CoA dehydrogenase-like.
 
 0.797
nuoC
NADH dehydrogenase I, D subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the N-terminal section; belongs to the complex I 30 kDa subunit family.
   
 
 0.761
RPD_1544
AMP-dependent synthetase and ligase.
   0.674
RPD_1539
Alcohol dehydrogenase, zinc-binding.
 
 
 0.542
RPD_1264
acyl-CoA dehydrogenase-like.
  
 0.481
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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