Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPD_1636Protein of unknown function DUF140. (383 aa)    
Predicted Functional Partners:
RPD_1637
ABC transporter related.
 
 0.999
RPD_1638
Mammalian cell entry related.
 
 0.997
RPD_1354
ABC transporter related.
 
 0.996
RPD_1355
Mammalian cell entry related.
 
 0.995
RPD_1353
Protein of unknown function DUF140.
  
  
 
0.903
RPD_1635
Mandelate racemase/muconate lactonizing enzyme.
       0.587
RPD_0177
ABC transporter related.
 
  
  0.565
bamA
Surface antigen (D15); Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
     0.510
RPD_2967
Permease YjgP/YjgQ.
  
 
 0.496
RPD_2966
Permease YjgP/YjgQ.
  
 
 0.486
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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