RPD_1672 protein (Rhodopseudomonas palustris BisB5)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

RPD_1672

Flagellar FlbT. (126 aa)

Predicted Functional Partners:

RPD_1673

0.996

RPD_2370

0.905

RPD_1668

0.890

RPD_1693

0.867

RPD_1685

0.861

RPD_3847

0.852

RPD_1682

0.850

fliE

0.840

RPD_1667

0.837

RPD_1669

0.829

Your Current Organism:

Rhodopseudomonas palustris BisB5

NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RPD_1667	RPD_1668	RPD_1667	RPD_1668	Protein of unknown function DUF1078-like.	Flagellar hook-associated protein; Belongs to the flagella basal body rod proteins family.	0.998
RPD_1667	RPD_1669	RPD_1667	RPD_1669	Protein of unknown function DUF1078-like.	Conserved hypothetical protein.	0.988
RPD_1667	RPD_1672	RPD_1667	RPD_1672	Protein of unknown function DUF1078-like.	Flagellar FlbT.	0.837
RPD_1667	RPD_1673	RPD_1667	RPD_1673	Protein of unknown function DUF1078-like.	Flagellar FlaF.	0.860
RPD_1667	RPD_1682	RPD_1667	RPD_1682	Protein of unknown function DUF1078-like.	Flageller protein FlgA.	0.978
RPD_1667	RPD_1685	RPD_1667	RPD_1685	Protein of unknown function DUF1078-like.	Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.	0.977
RPD_1667	RPD_1693	RPD_1667	RPD_1693	Protein of unknown function DUF1078-like.	Putative flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.	0.995
RPD_1667	RPD_2370	RPD_1667	RPD_2370	Protein of unknown function DUF1078-like.	Conserved hypothetical protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	0.985
RPD_1667	RPD_3847	RPD_1667	RPD_3847	Protein of unknown function DUF1078-like.	Protein of unknown function DUF1153.	0.498
RPD_1667	fliE	RPD_1667	RPD_1695	Protein of unknown function DUF1078-like.	Flagellar hook-basal body complex protein FliE.	0.992
RPD_1668	RPD_1667	RPD_1668	RPD_1667	Flagellar hook-associated protein; Belongs to the flagella basal body rod proteins family.	Protein of unknown function DUF1078-like.	0.998
RPD_1668	RPD_1669	RPD_1668	RPD_1669	Flagellar hook-associated protein; Belongs to the flagella basal body rod proteins family.	Conserved hypothetical protein.	0.998
RPD_1668	RPD_1672	RPD_1668	RPD_1672	Flagellar hook-associated protein; Belongs to the flagella basal body rod proteins family.	Flagellar FlbT.	0.890
RPD_1668	RPD_1673	RPD_1668	RPD_1673	Flagellar hook-associated protein; Belongs to the flagella basal body rod proteins family.	Flagellar FlaF.	0.929
RPD_1668	RPD_1682	RPD_1668	RPD_1682	Flagellar hook-associated protein; Belongs to the flagella basal body rod proteins family.	Flageller protein FlgA.	0.978
RPD_1668	RPD_1685	RPD_1668	RPD_1685	Flagellar hook-associated protein; Belongs to the flagella basal body rod proteins family.	Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.	0.974
RPD_1668	RPD_1693	RPD_1668	RPD_1693	Flagellar hook-associated protein; Belongs to the flagella basal body rod proteins family.	Putative flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.	0.978
RPD_1668	RPD_2370	RPD_1668	RPD_2370	Flagellar hook-associated protein; Belongs to the flagella basal body rod proteins family.	Conserved hypothetical protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	0.993
RPD_1668	RPD_3847	RPD_1668	RPD_3847	Flagellar hook-associated protein; Belongs to the flagella basal body rod proteins family.	Protein of unknown function DUF1153.	0.565
RPD_1668	fliE	RPD_1668	RPD_1695	Flagellar hook-associated protein; Belongs to the flagella basal body rod proteins family.	Flagellar hook-basal body complex protein FliE.	0.977