Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPD_1702Conserved hypothetical protein. (228 aa)    
Predicted Functional Partners:
RPD_1703
Glutathione S-transferase-like.
       0.706
RPD_1701
Import inner membrane translocase, subunit Tim44.
 
     0.663
RPD_3835
Methyltransferase type 12.
  
     0.651
RPD_1564
GtrA-like protein.
  
     0.492
RPD_1700
Cell cycle control histidine kinase CckA.
 
     0.441
RPD_4353
Conserved hypothetical protein.
  
     0.417
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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