Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPD_1767Cupin 2, conserved barrel. (127 aa)    
Predicted Functional Partners:
RPD_1766
Conserved hypothetical protein.
 
     0.948
murI
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.
       0.762
RPD_3101
Conserved hypothetical protein.
  
     0.732
RPD_2989
Conserved hypothetical protein.
  
    0.725
RPD_3690
Conserved hypothetical protein.
  
     0.708
RPD_3061
Conserved hypothetical protein.
 
   
 0.707
RPD_0392
Conserved hypothetical protein.
  
     0.701
RPD_2883
Methyltransferase FkbM.
 
 
   0.700
RPD_3610
Transcriptional regulator, TetR family.
 
  
 0.690
RPD_0996
Conserved hypothetical protein.
  
     0.668
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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