Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPD_1789Conserved hypothetical protein. (125 aa)    
Predicted Functional Partners:
RPD_1788
Molybdopterin molybdochelatase / molybdenum cofactor cytidylyltransferase.
  
    0.747
RPD_1787
Predicted sulfurylase large subunit, molybdopterin cytosine dinucleotide biosynthesis.
       0.696
RPD_1786
Predicted sulfurylase small subunit, molybdopterin cytosine dinucleotide biosynthesis.
       0.652
RPD_1785
VWA containing CoxE-like.
       0.561
RPD_4076
Hpt sensor hybrid histidine kinase.
   
 
 0.438
RPD_1784
ATPase associated with various cellular activities, AAA_5.
     
 0.428
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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