Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RPD_1815Extracellular solute-binding protein, family 5. (532 aa)    
Predicted Functional Partners:
RPD_1813
Binding-protein-dependent transport systems inner membrane component.
 
 
 0.979
RPD_1814
Binding-protein-dependent transport systems inner membrane component.
 
 
 0.979
RPD_1812
Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; Belongs to the ABC transporter superfamily.
 
 
 0.947
RPD_1811
Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; Belongs to the ABC transporter superfamily.
 
 
 0.942
RPD_4025
Binding-protein-dependent transport systems inner membrane component.
 
 
 0.919
RPD_4024
Binding-protein-dependent transport systems inner membrane component.
 
 
 0.911
RPD_1150
Binding-protein-dependent transport systems inner membrane component.
 
 
 0.884
RPD_1151
Binding-protein-dependent transport systems inner membrane component.
 
 
 0.876
RPD_0959
Pyruvate flavodoxin/ferredoxin oxidoreductase-like.
  
  
 0.828
RPD_4026
ABC transporter related; Belongs to the ABC transporter superfamily.
 
 
 0.603
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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