Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
RPD_1827Phenylacetate-CoA oxygenase, PaaJ subunit. (166 aa)    
Predicted Functional Partners:
RPD_1826
Phenylacetate-CoA oxygenase, PaaI subunit.
 
 
 0.999
RPD_1824
Phenylacetate-CoA oxygenase, PaaG subunit.
 
 
 0.998
RPD_1825
Phenylacetic acid degradation B.
 
 
 0.998
RPD_1828
Phenylacetate-CoA oxygenase/reductase, PaaK subunit.
 
 
 0.997
RPD_1830
Phenylacetic acid degradation protein PaaD.
 
 
 0.986
RPD_1831
Enoyl-CoA hydratase.
 
 
 0.971
RPD_1862
Enoyl-CoA hydratase.
 
 
 0.955
RPD_0274
Enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 
 0.942
RPD_1832
Phenylacetic acid degradation protein paaN.
 
  
 0.929
RPD_1508
phenylacetyl-CoA:acceptor oxidoreductase PadC subunit.
    
  0.902
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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