STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPD_1920Twin-arginine translocation pathway signal. (450 aa)    
Predicted Functional Partners:
RPD_1116
Conserved hypothetical protein.
 
     0.778
RPD_3278
Type IV pilus assembly PilZ.
  
     0.764
RPD_2699
Polysaccharide deacetylase.
 
     0.759
RPD_0883
Polysaccharide deacetylase.
 
     0.755
RPD_1950
Conserved hypothetical protein.
  
     0.728
RPD_1642
Hpt.
  
     0.721
RPD_3516
Conserved hypothetical protein.
  
     0.712
RPD_3518
Peptidase A24A, prepilin type IV.
  
     0.709
RPD_0301
Acyltransferase 3.
  
     0.693
RPD_1675
Hypothetical protein.
  
     0.689
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.