Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPD_1965Excinuclease ABC, C subunit-like. (95 aa)    
Predicted Functional Partners:
RPD_2225
Hypothetical protein.
  
     0.767
RPD_1966
Phage portal protein, HK97.
     
 0.546
RPD_0163
Protein of unknown function DUF559.
  
     0.483
RPD_1220
Protein of unknown function DUF559.
  
     0.475
RPD_2808
Protein of unknown function DUF559.
  
     0.456
RPD_1967
Conserved hypothetical protein.
       0.446
RPD_1968
Hypothetical protein.
       0.440
RPD_1215
Hypothetical protein.
  
  
 0.416
RPD_1216
Methyltransferase small; Belongs to the methyltransferase superfamily.
  
  
 0.416
RPD_3889
Methyltransferase type 11.
  
  
 0.416
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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