Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPD_1967Conserved hypothetical protein. (72 aa)    
Predicted Functional Partners:
RPD_1966
Phage portal protein, HK97.
 
     0.887
RPD_1969
Prohead peptidase. Unknown type peptidase. MEROPS family U35.
 
     0.833
RPD_1968
Hypothetical protein.
       0.805
RPD_1970
Phage major capsid protein, HK97.
 
     0.789
RPD_1980
Phage conserved hypothetical protein, phiE125 gp8.
 
     0.764
RPD_1985
Conserved hypothetical protein.
  
     0.759
RPD_1984
Gene transfer agent (GTA) orfg10.
 
     0.742
RPD_1986
Gene transfer agent (GTA) orfg11.
 
     0.722
RPD_1964
Protein of unknown function DUF264.
 
     0.696
RPD_1992
Putative phage cell wall peptidase, NlpC/P60.
 
     0.693
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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