STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPD_1979Peptidase S1 and S6, chymotrypsin/Hap. (234 aa)    
Predicted Functional Partners:
RPD_2551
Alpha-2-macroglobulin-like.
  
 
 0.967
dnaK
Chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
   
 
 0.873
RPD_4268
Twin-arginine translocation pathway signal.
  
 
 0.806
RPD_2896
Multicopper oxidase, type 2.
    
 0.779
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
    
 
 0.719
RPD_1772
Calcium-binding EF-hand.
    
 
 0.698
RPD_1981
Conserved hypothetical protein.
 
     0.663
RPD_2420
Alpha/beta hydrolase fold-3.
   
 0.661
RPD_0967
Peptidase S8 and S53, subtilisin, kexin, sedolisin.
  
 0.626
RPD_2017
Outer membrane autotransporter barrel.
  
 0.626
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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