STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPD_1979Peptidase S1 and S6, chymotrypsin/Hap. (234 aa)    
Predicted Functional Partners:
dnaK
Chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
    
 0.841
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
    
 0.838
RPD_1921
Peptidase C15, pyroglutamyl peptidase I; Removes 5-oxoproline from various penultimate amino acid residues except L-proline.
  
 
 
 0.832
RPD_1772
Calcium-binding EF-hand.
    
 
 0.821
RPD_1924
Conserved hypothetical protein.
 
 
 0.779
RPD_4191
Cytochrome b5.
    
 
 0.775
RPD_1276
Histone deacetylase superfamily.
    
  0.774
RPD_4303
Histone deacetylase superfamily.
    
  0.774
RPD_2621
Protein of unknown function DUF339.
   
 
 0.767
RPD_0847
WD-40 repeat.
 
 
 0.760
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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