STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPD_1987Conserved hypothetical protein. (211 aa)    
Predicted Functional Partners:
RPD_1983
Gene transfer agent (GTA) orf.
 
 
   0.986
RPD_1982
Gene transfer agent (GTA) orfg8.
 
   0.981
RPD_1991
Phage conserved hypothetical protein BR0599.
 
 
 
 0.977
RPD_1993
Gene transfer agent (GTA) orfg15.
 
 
   0.974
RPD_1980
Phage conserved hypothetical protein, phiE125 gp8.
 
 
 
 0.967
RPD_1986
Gene transfer agent (GTA) orfg11.
 
    0.947
RPD_1970
Phage major capsid protein, HK97.
 
 
 
 0.946
RPD_1966
Phage portal protein, HK97.
 
 
   0.944
RPD_1984
Gene transfer agent (GTA) orfg10.
 
     0.934
RPD_1981
Conserved hypothetical protein.
 
 
 
 0.917
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.