STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPD_1995Putative glycohydrolase. (245 aa)    
Predicted Functional Partners:
RPD_1996
Hypothetical protein.
       0.875
RPD_1994
Hypothetical protein.
 
  
 0.716
RPD_1986
Gene transfer agent (GTA) orfg11.
  
    0.691
RPD_1997
Two component transcriptional regulator, winged helix family.
       0.619
RPD_1998
ATP-binding region, ATPase-like.
       0.526
RPD_2017
Outer membrane autotransporter barrel.
  
   
 0.524
RPD_3849
Outer membrane autotransporter barrel.
  
     0.517
RPD_1993
Gene transfer agent (GTA) orfg15.
     
 0.507
RPD_1992
Putative phage cell wall peptidase, NlpC/P60.
 
    0.485
RPD_3871
Late embryogenesis abundant protein.
  
     0.432
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.