STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPD_1998ATP-binding region, ATPase-like. (465 aa)    
Predicted Functional Partners:
RPD_1997
Two component transcriptional regulator, winged helix family.
 
 0.944
RPD_2811
Transketolase, central region; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
    
 0.928
RPD_4076
Hpt sensor hybrid histidine kinase.
  
 
 0.862
RPD_4404
Two component transcriptional regulator, winged helix family.
 
 0.807
RPD_3682
Uncharacterised conserved protein UCP033924.
  
     0.634
RPD_4107
Conserved hypothetical protein.
  
     0.619
RPD_2012
Two component transcriptional regulator, winged helix family.
 
 
 0.617
RPD_1497
Hpt sensor hybrid histidine kinase.
  
 
 0.609
RPD_3866
Two component transcriptional regulator, LuxR family.
  
 
 0.606
RPD_3679
Conserved hypothetical protein.
  
 
 0.599
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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