STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPD_2009Rubrerythrin. (162 aa)    
Predicted Functional Partners:
RPD_2010
Ferredoxin.
 
   
0.763
RPD_4413
Conserved hypothetical protein.
  
    0.757
RPD_1080
Protein of unknown function DUF683.
  
    0.689
RPD_0966
Conserved hypothetical protein.
  
    0.601
RPD_1069
Conserved hypothetical protein.
  
     0.600
RPD_1067
LRV FeS4 cluster.
  
    0.574
RPD_1072
Conserved hypothetical protein.
  
    0.563
RPD_1091
Ferredoxin like protein, fixX; Could be a 3Fe-4S cluster-containing protein.
 
    0.531
RPD_1066
Conserved hypothetical protein.
  
     0.506
RPD_1532
Pyruvate flavodoxin/ferredoxin oxidoreductase-like.
 
    0.502
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.