Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
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Co-expression
Experiments
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[Homology]
Score
RPD_2013ATP-binding region, ATPase-like. (490 aa)    
Predicted Functional Partners:
RPD_2012
Two component transcriptional regulator, winged helix family.
 
 0.977
glnE
Glutamate-ammonia-ligase adenylyltransferase; Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transd [...]
     
 0.872
RPD_2811
Transketolase, central region; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
    
 0.828
RPD_4076
Hpt sensor hybrid histidine kinase.
  
 
 0.802
RPD_4404
Two component transcriptional regulator, winged helix family.
 
 
 0.792
RPD_1997
Two component transcriptional regulator, winged helix family.
 
 
 0.781
RPD_0893
Two component transcriptional regulator, winged helix family.
 
 
 0.691
RPD_3884
Two component transcriptional regulator, winged helix family.
 
 
 0.669
RPD_0440
Two component transcriptional regulator, winged helix family.
 
 
 0.657
RPD_2514
Response regulator receiver.
 
 
 0.654
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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