Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| RPD_0451 | RPD_0875 | RPD_0451 | RPD_0875 | Nitrogen regulatory protein P-II; Belongs to the P(II) protein family. | Glutamate synthase (NADH) large subunit. | 0.695 |
| RPD_0451 | RPD_2901 | RPD_0451 | RPD_2901 | Nitrogen regulatory protein P-II; Belongs to the P(II) protein family. | L-glutamine synthetase. | 0.429 |
| RPD_0451 | glnD | RPD_0451 | RPD_0116 | Nitrogen regulatory protein P-II; Belongs to the P(II) protein family. | protein-P-II uridylyltransferase; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen fixation and metabolism. | 0.673 |
| RPD_0451 | glnE | RPD_0451 | RPD_2014 | Nitrogen regulatory protein P-II; Belongs to the P(II) protein family. | Glutamate-ammonia-ligase adenylyltransferase; Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transd [...] | 0.400 |
| RPD_0451 | nadE | RPD_0451 | RPD_2060 | Nitrogen regulatory protein P-II; Belongs to the P(II) protein family. | NH(3)-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source. | 0.495 |
| RPD_0875 | RPD_0451 | RPD_0875 | RPD_0451 | Glutamate synthase (NADH) large subunit. | Nitrogen regulatory protein P-II; Belongs to the P(II) protein family. | 0.695 |
| RPD_0875 | RPD_2900 | RPD_0875 | RPD_2900 | Glutamate synthase (NADH) large subunit. | Nitrogen regulatory protein P-II; Belongs to the P(II) protein family. | 0.695 |
| RPD_0875 | RPD_2901 | RPD_0875 | RPD_2901 | Glutamate synthase (NADH) large subunit. | L-glutamine synthetase. | 0.989 |
| RPD_0875 | glnD | RPD_0875 | RPD_0116 | Glutamate synthase (NADH) large subunit. | protein-P-II uridylyltransferase; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen fixation and metabolism. | 0.764 |
| RPD_0875 | glnE | RPD_0875 | RPD_2014 | Glutamate synthase (NADH) large subunit. | Glutamate-ammonia-ligase adenylyltransferase; Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transd [...] | 0.653 |
| RPD_0875 | nadE | RPD_0875 | RPD_2060 | Glutamate synthase (NADH) large subunit. | NH(3)-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source. | 0.658 |
| RPD_2011 | RPD_2012 | RPD_2011 | RPD_2012 | Peptidase S1C, Do; Belongs to the peptidase S1C family. | Two component transcriptional regulator, winged helix family. | 0.611 |
| RPD_2011 | RPD_2013 | RPD_2011 | RPD_2013 | Peptidase S1C, Do; Belongs to the peptidase S1C family. | ATP-binding region, ATPase-like. | 0.548 |
| RPD_2011 | glnE | RPD_2011 | RPD_2014 | Peptidase S1C, Do; Belongs to the peptidase S1C family. | Glutamate-ammonia-ligase adenylyltransferase; Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transd [...] | 0.461 |
| RPD_2012 | RPD_2011 | RPD_2012 | RPD_2011 | Two component transcriptional regulator, winged helix family. | Peptidase S1C, Do; Belongs to the peptidase S1C family. | 0.611 |
| RPD_2012 | RPD_2013 | RPD_2012 | RPD_2013 | Two component transcriptional regulator, winged helix family. | ATP-binding region, ATPase-like. | 0.972 |
| RPD_2012 | glnE | RPD_2012 | RPD_2014 | Two component transcriptional regulator, winged helix family. | Glutamate-ammonia-ligase adenylyltransferase; Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transd [...] | 0.823 |
| RPD_2013 | RPD_2011 | RPD_2013 | RPD_2011 | ATP-binding region, ATPase-like. | Peptidase S1C, Do; Belongs to the peptidase S1C family. | 0.548 |
| RPD_2013 | RPD_2012 | RPD_2013 | RPD_2012 | ATP-binding region, ATPase-like. | Two component transcriptional regulator, winged helix family. | 0.972 |
| RPD_2013 | glnE | RPD_2013 | RPD_2014 | ATP-binding region, ATPase-like. | Glutamate-ammonia-ligase adenylyltransferase; Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transd [...] | 0.879 |
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