Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPD_2016Transcriptional regulator, AraC family. (337 aa)    
Predicted Functional Partners:
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.621
RPD_1446
Rv0623-like transcription factor.
  
    0.556
RPD_1123
BA14K-like.
  
     0.544
RPD_2798
Conserved hypothetical protein.
  
 
 
 0.528
RPD_2017
Outer membrane autotransporter barrel.
 
  
 0.513
RPD_2015
Conserved hypothetical protein.
       0.503
RPD_2084
Conserved hypothetical protein.
  
   
 0.495
RPD_3911
Conserved hypothetical protein.
  
     0.460
RPD_3600
Hypothetical protein.
  
     0.459
RPD_2799
Conserved hypothetical protein.
  
     0.452
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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