STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPD_2017Outer membrane autotransporter barrel. (1156 aa)    
Predicted Functional Partners:
RPD_3849
Outer membrane autotransporter barrel.
  
   
 0.861
RPD_1664
Conserved hypothetical protein.
 
     0.759
RPD_2799
Conserved hypothetical protein.
  
    0.752
RPD_0459
Histidine kinase, HAMP region.
 
     0.747
RPD_2580
Conserved hypothetical protein.
  
   
 0.744
RPD_2083
Radical SAM.
 
     0.741
RPD_0968
TPR repeat.
 
    0.728
RPD_0465
Putative AlgJ protein, required for O-acetylation of alginate in Pseudomonas aeruginosa.
  
   
 0.727
RPD_3889
Methyltransferase type 11.
 
     0.726
RPD_4390
TonB-dependent receptor.
  
     0.724
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.