STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPD_2019Cation diffusion facilitator family transporter; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family. (459 aa)    
Predicted Functional Partners:
mdh
Malate dehydrogenase (NAD); Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family.
  
    0.840
RPD_2308
Heavy metal translocating P-type ATPase.
 
 
 0.600
RPD_2020
Alcohol dehydrogenase, zinc-binding.
       0.552
RPD_2018
ATP-binding region, ATPase-like.
 
  
 0.541
RPD_2131
Cation diffusion facilitator family transporter.
 
 
 0.501
RPD_3637
Iron permease FTR1.
     
 0.468
RPD_0857
Conserved hypothetical protein.
  
     0.459
RPD_2021
2-nitropropane dioxygenase, NPD.
       0.459
RPD_1944
Multi-sensor signal transduction histidine kinase.
  
  
 0.455
RPD_3068
Conserved hypothetical protein.
  
     0.451
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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