Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPD_2071FAD linked oxidase-like. (469 aa)    
Predicted Functional Partners:
RPD_2070
Thiamine pyrophosphate enzyme-like TPP-binding.
  
 
 0.873
RPD_3916
L-lactate dehydrogenase (cytochrome).
 
 0.534
RPD_0930
Electron transfer flavoprotein beta-subunit.
 
 
 0.532
RPD_0931
Electron transfer flavoprotein, alpha subunit.
 
 
 0.508
RPD_1088
Electron transfer flavoprotein beta-subunit.
 
 
 0.504
RPD_1089
Electron transfer flavoprotein beta-subunit.
 
 
 0.488
RPD_2069
2-isopropylmalate synthase; Belongs to the alpha-IPM synthase/homocitrate synthase family.
     
 0.453
RPD_2068
Acetyltransferase, GNAT family.
       0.450
RPD_4135
Protein of unknown function DUF224, cysteine-rich region.
 
  
 0.444
RPD_0875
Glutamate synthase (NADH) large subunit.
     
 0.437
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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