STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPD_2104Substrate-binding region of ABC-type glycine betaine transport system. (519 aa)    
Predicted Functional Partners:
RPD_2105
ABC transporter related.
 0.999
RPD_3778
Conserved hypothetical protein.
  
  
 0.629
RPD_3868
Conserved hypothetical protein.
  
  
 0.629
RPD_3871
Late embryogenesis abundant protein.
  
  
 0.629
RPD_2811
Transketolase, central region; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
  
  
 0.581
RPD_2106
ABC transporter related.
    
 0.575
RPD_3730
Photosynthetic reaction centre, H-chain.
  
  
 0.552
RPD_1758
Conserved hypothetical protein.
 
     0.548
RPD_1759
Protein of unknown function DUF323.
 
     0.530
RPD_0959
Pyruvate flavodoxin/ferredoxin oxidoreductase-like.
     
 0.511
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.