Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPD_2113TRAP dicarboxylate transporter, DctP subunit. (334 aa)    
Predicted Functional Partners:
RPD_2115
TRAP dicarboxylate transporter- DctM subunit.
 
 0.994
RPD_2114
Tripartite ATP-independent periplasmic transporter, DctQ component.
 
  
 0.960
RPD_2721
TRAP C4-dicarboxylate transport system permease DctM subunit.
 
  
 0.925
RPD_0611
TRAP dicarboxylate transporter- DctM subunit.
 
  
 0.835
RPD_1885
TRAP dicarboxylate transporter- DctP subunit.
  
   
 0.703
RPD_2050
TRAP dicarboxylate transporter- DctM subunit.
 
   
 0.614
leuA
2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 1 subfamily.
       0.554
RPD_0610
Tripartite ATP-independent periplasmic transporter, DctQ component.
 
  
 0.552
RPD_3311
TRAP transporter, 4TM/12TM fusion protein.
  
   
 0.520
RPD_4225
TRAP transporter, 4TM/12TM fusion protein.
  
   
 0.515
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
Server load: low (6%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.