STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPD_2115TRAP dicarboxylate transporter- DctM subunit. (441 aa)    
Predicted Functional Partners:
RPD_2113
TRAP dicarboxylate transporter, DctP subunit.
 
 0.994
RPD_2114
Tripartite ATP-independent periplasmic transporter, DctQ component.
 
 0.990
RPD_2722
TRAP dicarboxylate transporter, DctP subunit.
  
 0.896
RPD_0609
TRAP dicarboxylate transporter- DctP subunit.
 
  
 0.844
RPD_1885
TRAP dicarboxylate transporter- DctP subunit.
 
  
 0.777
RPD_2116
Conserved hypothetical protein.
       0.633
RPD_0610
Tripartite ATP-independent periplasmic transporter, DctQ component.
  
 
 0.631
leuA
2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 1 subfamily.
  
 
 0.612
RPD_2721
TRAP C4-dicarboxylate transport system permease DctM subunit.
 
 
0.598
RPD_2049
Twin-arginine translocation pathway signal; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
  
  
 0.591
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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