STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPD_2115TRAP dicarboxylate transporter- DctM subunit. (441 aa)    
Predicted Functional Partners:
RPD_2113
TRAP dicarboxylate transporter, DctP subunit.
 
 0.994
RPD_2114
Tripartite ATP-independent periplasmic transporter, DctQ component.
 
 0.990
RPD_2722
TRAP dicarboxylate transporter, DctP subunit.
  
 0.879
RPD_0609
TRAP dicarboxylate transporter- DctP subunit.
 
  
 0.818
RPD_1885
TRAP dicarboxylate transporter- DctP subunit.
 
  
 0.760
RPD_0610
Tripartite ATP-independent periplasmic transporter, DctQ component.
  
 
 0.636
RPD_2721
TRAP C4-dicarboxylate transport system permease DctM subunit.
 
 
0.595
RPD_2049
Twin-arginine translocation pathway signal; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
  
 0.591
RPD_2116
Conserved hypothetical protein.
       0.570
RPD_3311
TRAP transporter, 4TM/12TM fusion protein.
  
     0.551
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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