Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPD_2128Transposase, mutator type; Required for the transposition of the insertion element. (155 aa)    
Predicted Functional Partners:
RPD_2177
ATPase.
 
    0.591
RPD_0760
Integrase, catalytic region.
 
   
 0.573
RPD_2390
Conserved hypothetical protein.
 
   
 0.481
RPD_0078
Transposase, IS4 family.
 
     0.476
RPD_0213
Transposase, IS4 family.
 
     0.476
RPD_0216
Transposase, IS4 family.
 
     0.476
RPD_0826
Transposase, IS4 family.
 
     0.476
RPD_4411
Transposase, IS4 family.
 
     0.476
RPD_1226
Transposase, IS4 family.
 
     0.475
RPD_2127
Hypothetical protein.
       0.401
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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