RPD_2161 protein (Rhodopseudomonas palustris BisB5)

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Score

RPD_2161

ATP dependent DNA ligase. (313 aa)

Predicted Functional Partners:

RPD_3490

0.930

polA

0.918

RPD_0002

0.881

ku

0.844

ku-2

0.844

RPD_0794

0.664

RPD_1799

0.550

RPD_2162

0.541

RPD_1611

0.525

RPD_1902

0.510

Your Current Organism:

Rhodopseudomonas palustris BisB5

NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RPD_0002	RPD_0794	RPD_0002	RPD_0794	DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]	Putative mRNA 3-end processing factor.	0.441
RPD_0002	RPD_1902	RPD_0002	RPD_1902	DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]	Conserved hypothetical protein.	0.851
RPD_0002	RPD_2161	RPD_0002	RPD_2161	DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]	ATP dependent DNA ligase.	0.881
RPD_0002	RPD_3490	RPD_0002	RPD_3490	DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]	ATP dependent DNA ligase.	0.915
RPD_0002	polA	RPD_0002	RPD_0956	DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	0.987
RPD_0794	RPD_0002	RPD_0794	RPD_0002	Putative mRNA 3-end processing factor.	DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]	0.441
RPD_0794	RPD_2161	RPD_0794	RPD_2161	Putative mRNA 3-end processing factor.	ATP dependent DNA ligase.	0.664
RPD_0794	RPD_3490	RPD_0794	RPD_3490	Putative mRNA 3-end processing factor.	ATP dependent DNA ligase.	0.618
RPD_0794	polA	RPD_0794	RPD_0956	Putative mRNA 3-end processing factor.	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	0.610
RPD_1611	RPD_2161	RPD_1611	RPD_2161	D-alpha,beta-D-heptose 1,7-bisphosphate phosphatase.	ATP dependent DNA ligase.	0.525
RPD_1611	RPD_3490	RPD_1611	RPD_3490	D-alpha,beta-D-heptose 1,7-bisphosphate phosphatase.	ATP dependent DNA ligase.	0.562
RPD_1799	RPD_2161	RPD_1799	RPD_2161	Protein of unknown function DUF72.	ATP dependent DNA ligase.	0.550
RPD_1799	RPD_3490	RPD_1799	RPD_3490	Protein of unknown function DUF72.	ATP dependent DNA ligase.	0.792
RPD_1799	ku	RPD_1799	RPD_0154	Protein of unknown function DUF72.	Conserved hypothetical protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.	0.532
RPD_1799	ku-2	RPD_1799	RPD_3491	Protein of unknown function DUF72.	Conserved hypothetical protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.	0.551
RPD_1902	RPD_0002	RPD_1902	RPD_0002	Conserved hypothetical protein.	DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]	0.851
RPD_1902	RPD_2161	RPD_1902	RPD_2161	Conserved hypothetical protein.	ATP dependent DNA ligase.	0.510
RPD_1902	RPD_3490	RPD_1902	RPD_3490	Conserved hypothetical protein.	ATP dependent DNA ligase.	0.588
RPD_1902	polA	RPD_1902	RPD_0956	Conserved hypothetical protein.	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	0.705
RPD_2161	RPD_0002	RPD_2161	RPD_0002	ATP dependent DNA ligase.	DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]	0.881