STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPD_2178Hypothetical protein. (487 aa)    
Predicted Functional Partners:
RPD_0444
Cell divisionFtsK/SpoIIIE.
  
 
 0.811
RPD_2354
TonB-dependent haem/haemoglobin receptor.
   
 
 0.789
RPD_2017
Outer membrane autotransporter barrel.
  
 
 0.668
RPD_3390
Conserved hypothetical protein.
    
 
 0.643
RPD_0566
C-terminal processing peptidase-3. Serine peptidase. MEROPS family S41A; Belongs to the peptidase S41A family.
  
 
 0.624
RPD_0967
Peptidase S8 and S53, subtilisin, kexin, sedolisin.
  
 
 0.575
RPD_2179
Hypothetical protein.
  
    0.527
RPD_2006
PgPepO oligopeptidase. Metallo peptidase. MEROPS family M13.
  
    0.512
RPD_2180
Hypothetical protein.
       0.454
RPD_2616
Conserved hypothetical protein.
    
 
 0.437
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.