STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPD_2178Hypothetical protein. (487 aa)    
Predicted Functional Partners:
RPD_0444
Cell divisionFtsK/SpoIIIE.
  
 
 0.795
RPD_2354
TonB-dependent haem/haemoglobin receptor.
   
 
 0.783
RPD_0940
Conserved hypothetical protein.
   
 
 0.707
RPD_0566
C-terminal processing peptidase-3. Serine peptidase. MEROPS family S41A; Belongs to the peptidase S41A family.
  
 
 0.703
RPD_2482
TonB-dependent receptor.
   
 
 0.698
RPD_4390
TonB-dependent receptor.
   
 
 0.698
RPD_2006
PgPepO oligopeptidase. Metallo peptidase. MEROPS family M13.
  
  
 0.594
RPD_2017
Outer membrane autotransporter barrel.
  
 
 0.554
RPD_2179
Hypothetical protein.
  
    0.526
RPD_0801
Sel1.
  
 
 0.470
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.