Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPD_2188Allophanate hydrolase subunit 2. (1183 aa)    
Predicted Functional Partners:
RPD_3802
Amidase.
  
 0.998
RPD_0602
Carbamoyl-phosphate synthase L chain, ATP-binding.
  
 0.992
RPD_2635
Allophanate hydrolase subunit 2.
 
0.992
RPD_2636
Conserved hypothetical protein.
  
0.990
pxpA
LamB/YcsF; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
  
  
 0.976
RPD_2186
Conserved hypothetical protein.
 
   
 0.973
RPD_2187
Conserved hypothetical protein.
 
   
 0.973
RPD_1846
Protein of unknown function DUF1445; Belongs to the D-glutamate cyclase family.
  
    0.961
RPD_0351
Propionyl-CoA carboxylase.
  
 0.945
RPD_2204
Propionyl-CoA carboxylase.
  
 0.945
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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