STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPD_2201Transcriptional regulator, AraC family. (275 aa)    
Predicted Functional Partners:
RPD_2202
Protein of unknown function DUF849.
 
     0.588
RPD_0711
Conserved hypothetical protein.
  
     0.581
RPD_2200
Glutathione S-transferase-like.
     
 0.572
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.554
RPD_3599
Conserved hypothetical protein.
  
     0.511
RPD_2199
acyl-CoA dehydrogenase-like.
 
   
 0.490
RPD_0273
Conserved hypothetical protein.
 
   
 0.475
RPD_3126
Conserved hypothetical protein.
  
     0.468
RPD_2702
Protein of unknown function DUF1211.
 
     0.462
RPD_0951
Hypothetical protein.
  
     0.424
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.