Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPD_2202Protein of unknown function DUF849. (288 aa)    
Predicted Functional Partners:
RPD_3020
Putative cyclase.
  
  
 0.810
RPD_3968
Cupin 2, conserved barrel.
  
    0.777
RPD_2201
Transcriptional regulator, AraC family.
 
     0.588
RPD_3365
Thioesterase-like.
 
  
 0.507
RPD_2203
AMP-dependent synthetase and ligase.
       0.502
RPD_0807
3-hydroxyacyl-CoA dehydrogenase, NAD-binding; Belongs to the enoyl-CoA hydratase/isomerase family.
  
  
 0.446
RPD_3553
Short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
  
 0.446
RPD_2206
Enoyl-CoA hydratase/isomerase.
      0.443
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
       0.425
RPD_2204
Propionyl-CoA carboxylase.
       0.423
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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