Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
RPD_2210Catechol 1,2-dioxygenase. (302 aa)    
Predicted Functional Partners:
RPD_4409
Iron-containing alcohol dehydrogenase.
 
 0.966
RPD_1304
Carboxymethylenebutenolidase.
  
 
 0.922
RPD_3874
Dienelactone hydrolase.
  
 
 0.922
RPD_1635
Mandelate racemase/muconate lactonizing enzyme.
  
  
 0.865
RPD_2211
Aldo/keto reductase.
  
    0.828
RPD_0939
4-carboxymuconolactone decarboxylase.
 
  
 0.717
RPD_1204
Putative CoA transferase, subunit B.
  
  
 0.671
RPD_1884
4-hydroxybenzoate 3-monooxygenase.
 
   
 0.587
RPD_3586
HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.
 
  
 0.562
RPD_2498
Haloacid dehalogenase, type II.
  
   
 0.561
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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