Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
RPD_2233Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit. (367 aa)    
Predicted Functional Partners:
RPD_2234
Cupin 2, conserved barrel.
 
  
 0.996
mtnA
Translation initiation factor 2B subunit I family (IF-2BI); Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P).
 
 
 0.955
RPD_1548
Ribulose 1,5-bisphosphate carboxylase small subunit.
 
 
 0.892
RPD_3721
Ribulose 1,5-bisphosphate carboxylase small subunit.
 
 
 0.888
RPD_1051
Phosphoribulokinase.
 
 
 0.706
RPD_3284
Transferase hexapeptide repeat.
    
 
 0.621
pgk
Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
    
 0.531
eno
Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.
     
 0.519
gpmI
Phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
     
 0.518
RPD_1853
Class II aldolase/adducin-like.
  
  
 0.518
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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