Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPD_2240Protein of unknown function DUF404. (489 aa)    
Predicted Functional Partners:
RPD_2239
Protein of unknown function DUF403.
    0.981
RPD_2238
Transglutaminase-like.
 
    0.913
RPD_2237
Putative proteasome-type protease.
 
    0.866
RPD_3583
Transglutaminase-like.
 
    0.832
RPD_3978
Transglutaminase-like.
 
    0.831
RPD_3584
Protein of unknown function DUF404.
 
   
0.769
RPD_3838
Transglutaminase-like.
 
    0.733
RPD_3585
Transglutaminase-like.
 
    0.728
RPD_3214
Transglutaminase-like.
 
    0.722
RPD_2241
Molybdopterin binding domain.
       0.699
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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