STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPD_2265Alcohol dehydrogenase, zinc-binding. (341 aa)    
Predicted Functional Partners:
RPD_2266
Hypothetical protein.
       0.773
RPD_2267
Protein of unknown function DUF1123.
       0.674
RPD_2268
Fmu (Sun); Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
       0.606
RPD_2211
Aldo/keto reductase.
   
 
 0.505
RPD_3073
2,5-didehydrogluconate reductase.
   
 
 0.505
RPD_3895
Aldo/keto reductase.
   
 
 0.505
RPD_3209
Aminoglycoside phosphotransferase.
 
    0.487
guaB
Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
     
 0.486
RPD_1863
Aminoglycoside phosphotransferase.
 
    0.428
RPD_0617
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
  
  
 0.417
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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