Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
RPD_0002 | RPD_0202 | RPD_0002 | RPD_0202 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | DNA helicase/exodeoxyribonuclease V, subunit A; Belongs to the helicase family. UvrD subfamily. | 0.447 |
RPD_0002 | RPD_2276 | RPD_0002 | RPD_2276 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | MobA/MobL protein. | 0.661 |
RPD_0002 | polA | RPD_0002 | RPD_0956 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.996 |
RPD_0037 | RPD_2276 | RPD_0037 | RPD_2276 | UvrD/REP helicase. | MobA/MobL protein. | 0.733 |
RPD_0037 | polA | RPD_0037 | RPD_0956 | UvrD/REP helicase. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.493 |
RPD_0202 | RPD_0002 | RPD_0202 | RPD_0002 | DNA helicase/exodeoxyribonuclease V, subunit A; Belongs to the helicase family. UvrD subfamily. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.447 |
RPD_0202 | RPD_2276 | RPD_0202 | RPD_2276 | DNA helicase/exodeoxyribonuclease V, subunit A; Belongs to the helicase family. UvrD subfamily. | MobA/MobL protein. | 0.733 |
RPD_0202 | polA | RPD_0202 | RPD_0956 | DNA helicase/exodeoxyribonuclease V, subunit A; Belongs to the helicase family. UvrD subfamily. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.493 |
RPD_1985 | RPD_2276 | RPD_1985 | RPD_2276 | Conserved hypothetical protein. | MobA/MobL protein. | 0.463 |
RPD_2274 | RPD_2275 | RPD_2274 | RPD_2275 | Conjugal transfer TraD. | Conserved hypothetical protein. | 0.787 |
RPD_2274 | RPD_2276 | RPD_2274 | RPD_2276 | Conjugal transfer TraD. | MobA/MobL protein. | 0.529 |
RPD_2275 | RPD_2274 | RPD_2275 | RPD_2274 | Conserved hypothetical protein. | Conjugal transfer TraD. | 0.787 |
RPD_2275 | RPD_2276 | RPD_2275 | RPD_2276 | Conserved hypothetical protein. | MobA/MobL protein. | 0.529 |
RPD_2276 | RPD_0002 | RPD_2276 | RPD_0002 | MobA/MobL protein. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.661 |
RPD_2276 | RPD_0037 | RPD_2276 | RPD_0037 | MobA/MobL protein. | UvrD/REP helicase. | 0.733 |
RPD_2276 | RPD_0202 | RPD_2276 | RPD_0202 | MobA/MobL protein. | DNA helicase/exodeoxyribonuclease V, subunit A; Belongs to the helicase family. UvrD subfamily. | 0.733 |
RPD_2276 | RPD_1985 | RPD_2276 | RPD_1985 | MobA/MobL protein. | Conserved hypothetical protein. | 0.463 |
RPD_2276 | RPD_2274 | RPD_2276 | RPD_2274 | MobA/MobL protein. | Conjugal transfer TraD. | 0.529 |
RPD_2276 | RPD_2275 | RPD_2276 | RPD_2275 | MobA/MobL protein. | Conserved hypothetical protein. | 0.529 |
RPD_2276 | RPD_2277 | RPD_2276 | RPD_2277 | MobA/MobL protein. | Phage transcriptional regulator, AlpA. | 0.874 |
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