Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPD_2279Hypothetical protein. (134 aa)    
Predicted Functional Partners:
RPD_2282
Antirestriction protein; ArdC.
 
     0.860
RPD_1451
Cobyrinic acid a,c-diamide synthase.
 
 
 0.770
rsmG
Methyltransferase GidB; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA.
  
  
 0.743
RPD_0432
Chromosome segregation ATPase.
  
 
 0.731
RPD_3062
Putative chromosome partitioning protein ParA.
  
 
 0.731
RPD_2578
Conserved hypothetical protein.
    
 
 0.704
RPD_2280
Transcriptional regulator-like.
       0.486
RPD_2281
Conserved hypothetical protein.
       0.486
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
     
 0.452
RPD_3950
MobA/MobL protein.
 
  
 0.446
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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