Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPD_2296Protein of unknown function DUF955. (307 aa)    
Predicted Functional Partners:
RPD_2295
Transcriptional regulator.
 
  
 0.958
RPD_2294
Conserved hypothetical protein.
 
     0.893
RPD_2293
Conserved hypothetical protein.
 
     0.873
RPD_2292
Patatin.
 
     0.848
RPD_2297
Hypothetical protein.
       0.714
RPD_2298
Tetratricopeptide TPR_2.
       0.714
RPD_2343
Conserved hypothetical protein.
  
     0.623
RPD_3935
Putative transposase.
  
     0.593
RPD_3934
Transposase, IS204/IS1001/IS1096/IS1165.
  
     0.575
RPD_1268
Extensin-like.
  
     0.502
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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