Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPD_2349Transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (361 aa)    
Predicted Functional Partners:
hmuV
ABC transporter related; Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system.
 
 
 0.985
RPD_2350
Periplasmic binding protein.
 
 
 0.984
RPD_0631
ABC transporter related.
 
 
 0.895
RPD_2923
ABC transporter related.
 
 
 0.884
RPD_2351
Conserved hypothetical protein.
  
  
 0.875
RPD_2478
ABC transporter related.
 
 
 0.873
RPD_2480
Periplasmic binding protein.
 
 
 0.775
RPD_2922
Periplasmic binding protein.
 
 
 0.730
RPD_2354
TonB-dependent haem/haemoglobin receptor.
 
  
 0.676
RPD_0632
Periplasmic binding protein.
 
 
 0.663
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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