Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RPD_2355Antibiotic biosynthesis monooxygenase. (138 aa)    
Predicted Functional Partners:
RPD_2354
TonB-dependent haem/haemoglobin receptor.
 
    0.898
RPD_2356
Heme utilization protein HuvX.
 
     0.847
RPD_2359
TonB-like.
 
    0.778
RPD_2357
MotA/TolQ/ExbB proton channel.
  
    0.727
RPD_2358
Biopolymer transport protein ExbD/TolR.
       0.706
RPD_2350
Periplasmic binding protein.
 
     0.486
RPD_2353
NmrA-like.
  
    0.457
RPD_2352
Coproporphyrinogen III oxidase, anaerobic.
  
  
 0.408
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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