STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPD_2385Hypothetical protein. (89 aa)    
Predicted Functional Partners:
RPD_2384
4-hydroxybenzoyl-CoA thioesterase.
       0.782
RPD_2921
Conserved hypothetical protein.
  
     0.747
RPD_1084
Nitrogen-fixing NifU-like; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
  
  
 0.732
RPD_3774
Conserved hypothetical protein.
  
     0.663
RPD_2322
Citrate utilization protein B.
 
   
 0.623
RPD_0462
Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; Belongs to the RuBisCO large chain family.
  
   
 0.610
RPD_2387
Hypothetical protein.
 
     0.609
RPD_0959
Pyruvate flavodoxin/ferredoxin oxidoreductase-like.
 
   
 0.548
RPD_2386
Hypothetical protein.
       0.548
RPD_2010
Ferredoxin.
 
  
 0.538
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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