STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPD_2389ABC transporter related. (615 aa)    
Predicted Functional Partners:
RPD_2074
ABC transporter related.
    
0.589
RPD_2388
Hypothetical protein.
       0.524
RPD_1276
Histone deacetylase superfamily.
 
 0.512
RPD_3720
AAA ATPase, central region.
   
 0.496
RPD_3153
Tetratricopeptide TPR_2.
  
 
 0.491
RPD_0302
ATP-dependent helicase HrpB.
  
 
  0.478
RPD_0129
ABC transporter related.
  
0.453
RPD_1793
ABC transporter related.
  
0.453
RPD_3370
ABC transporter related.
  
0.453
RPD_3943
Hypothetical protein.
  
 0.453
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.